OneTrust Bookkeeping
Ecommerce Bookkeeping Services

Ecommerce Bookkeeping for
Shopify, Amazon & Online Sellers

Offshore bookkeeping professionals who turn complex platform data into clean financial records for Shopify stores, Amazon sellers, marketplace brands, online retailers, DTC businesses, and CPA firms serving ecommerce clients.

Shopify payout and Amazon settlement reconciliation
Stripe, PayPal, Square, and gateway deposit matching
Refunds, returns, chargebacks, fees, and sales tax records
Inventory, COGS, cash flow, and channel reporting support
8+
Platforms and gateways supported
100%
Payouts matched to source reports
COGS
Inventory cost support built in
CPA
Review-ready monthly reports
Ecommerce warehouse packages prepared for online orders
Shopify Payout
Reconciled
Amazon Settlement
Matched
Stripe Deposits
In Review
COGS Update
Scheduled
🛍️ Shopify & Amazon Specialists
💳 Gateway Reconciliation
📦 Inventory & COGS Support
📊 Margin & Cash Flow Reports
🔒 Secure Cloud Workflows
The Problem

Why Ecommerce Bookkeeping Needs a Specialized Approach

Ecommerce businesses deal with platform payouts, marketplace fees, payment processor deductions, refunds, chargebacks, shipping costs, sales tax, inventory movement, discounts, subscriptions, advertising expenses, and international transactions.

A single bank deposit may include multiple sales, refunds, platform fees, payment processing charges, gift cards, discounts, and tax amounts. If those items are recorded incorrectly, your reports may show misleading revenue and unclear margins.

This is not generic bookkeeping. It is structured ecommerce accounting support for online businesses that need accurate reporting, margin visibility, and scalable financial operations.
🔄

Payout Reconciliation

Shopify and Amazon deposits rarely match gross sales because fees, refunds, and adjustments are netted out.

💳

Gateway Fees

Stripe, PayPal, Square, and Shopify Payments need clean deposit and fee matching.

↩️

Refunds and Returns

Reversals and chargebacks must be separated from gross revenue.

📦

Inventory and COGS

Inventory costs and COGS affect gross margin and profitability.

Services Included

Ecommerce Bookkeeping Services We Provide

Monthly ecommerce bookkeeping support built around the real financial complexity of online selling.

🛍️

Shopify Bookkeeping

Shopify Payments, third-party gateways, app fees, discounts, gift cards, refunds, and shipping income.

📦

Amazon Seller Bookkeeping

Seller Central settlement reconciliation, FBA fees, referral fees, advertising costs, and reimbursements.

🌐

Multi-Channel Reconciliation

Revenue and cash reconciliation across WooCommerce, Etsy, eBay, Walmart Marketplace, and more.

💳

Payment Gateway Reconciliation

Stripe, PayPal, Square, and gateway deposits matched against source activity.

📊

Financial Reporting

Profit and loss statements, balance sheets, cash flow summaries, and channel-level reports.

📥

Accounts Payable

Vendor bills, supplier payments, subscriptions, inventory purchases, and operating expenses.

🧾

Sales Tax Records

Platform-collected tax and records for CPA review, Avalara, TaxJar, and sales tax workflows.

🔁

Catch-Up and Cleanup

Review old transactions, correct errors, reconcile accounts, and bring ecommerce books current.

Profit Visibility

Better Profit Visibility for Ecommerce Brands

Sales growth only helps when the books show what is left after fees, refunds, shipping, advertising, inventory costs, and platform deductions.

📈

Channel Profitability

Review which sales channels are profitable instead of relying on one blended revenue number.

💸

Fee and Refund Impact

Marketplace fees, gateway fees, chargebacks, and returns are separated clearly.

🚚

Shipping and Fulfillment

Track shipping, fulfillment, and warehouse costs beside product and channel performance.

Cash Flow

Ecommerce Bookkeeping for Cash Flow Control

A store can show strong revenue and still feel cash tight. Clean bookkeeping helps owners see what came in, what went out, what is due, and which costs are rising.

Platform payouts
Gateway deposits
Refunds and returns
Marketplace fees
Inventory purchases
Shipping costs
Advertising spend
Sales tax obligations
Vendor payments
Payroll costs
Available cash
Month-end reporting
Who We Serve

Ecommerce Bookkeeping for Different Online Business Models

🛒

Shopify Stores

Payout reconciliation, app fees, refunds, and payment processor activity for Shopify merchants.

📦

Amazon Sellers

Settlement reconciliation, FBA fees, reimbursements, and monthly bookkeeping for FBA and FBM sellers.

🌐

Marketplace Sellers

Support for Etsy, eBay, Walmart Marketplace, WooCommerce, and multi-channel sellers.

🏷️

DTC Brands

Revenue, inventory, advertising, shipping, and channel performance reporting for DTC brands.

🏢

Online Retailers

Bookkeeping workflows for higher-volume stores with more vendors, platforms, and reporting needs.

🧑‍💼

CPA Firms

Offshore ecommerce bookkeeping support for client books, reconciliations, cleanup, and close work.

Software Expertise

Software and Platforms We Work With

Our team works inside your current ecommerce, payment, payroll, and accounting systems without forcing unnecessary disruption.

📗

Accounting Software

QuickBooks Online, QuickBooks Desktop, Xero, NetSuite, Sage, and Zoho Books.

🛍️

Ecommerce Platforms

Shopify, Amazon Seller Central, WooCommerce, Etsy, eBay, and Walmart Marketplace.

🔗

Apps and Gateways

Stripe, PayPal, Square, A2X, Synder, Avalara, TaxJar, Bill.com, Gusto, ADP, and more.

How It Works

Our Ecommerce Bookkeeping Process

1

Discovery

We review your sales channels, accounting software, payment gateways, transaction volume, inventory workflow, and bookkeeping challenges.

2

Accounting Review

We assess existing books, chart of accounts, platform reports, bank reconciliations, gateway activity, and prior cleanup needs.

3

Workflow Setup

We align payout reports, gateway deposits, marketplace fees, inventory entries, AP, AR, and monthly reporting workflows.

4

Monthly Bookkeeping

Our team supports recurring categorization, reconciliations, fee recording, sales tax records, inventory accounting, and reports.

5

Reporting and Improvement

We prepare reports and refine the process as your ecommerce business adds channels or scales order volume.

Why OneTrust

Why Ecommerce Businesses Choose OneTrust Bookkeeping

We help ecommerce businesses maintain cleaner books, improve margin visibility, and build accounting workflows that support growth.

🔄

Platform-Aware Reconciliation

We reconcile payouts and settlements instead of treating every net deposit as simple income.

📊

Margin-Focused Reporting

Fees, refunds, shipping, advertising, and COGS are organized for clearer financial decisions.

🔒

Secure Offshore Support

Dedicated offshore bookkeeping professionals support your workflow through secure cloud access and clear communication.

FAQs

Ecommerce Bookkeeping Services - Frequently Asked Questions

Ecommerce bookkeeping services include recording and reconciling online sales, marketplace payouts, gateway deposits, refunds, platform fees, inventory costs, sales tax records, expenses, and reports for online businesses.
Yes. We help Shopify merchants reconcile payouts, record Shopify Payments and third-party gateway fees, track refunds, organize sales activity, and prepare monthly reports.
Yes. We support Amazon sellers with settlement reconciliation, FBA fee tracking, referral fee categorization, refund review, reimbursement tracking, and monthly bookkeeping.
Yes. We reconcile Stripe, PayPal, Shopify Payments, Square, and other gateway deposits, including processing fees, refunds, chargebacks, reserve holds, and net cash receipts.
Yes. We support inventory-related bookkeeping and cost of goods sold records based on the information available from your ecommerce systems and inventory workflow.
Yes. CPA firms can use our offshore team to support ecommerce client bookkeeping, reconciliations, cleanup projects, reporting, and month-end close.
Get Started

Build Cleaner Books for Your Ecommerce Business

OneTrust Bookkeeping helps ecommerce businesses maintain cleaner records with offshore professionals who support monthly bookkeeping, payout reconciliation, payment gateway reconciliation, AP, AR, inventory-related accounting, cleanup, catch-up work, and reporting.

Fast Discovery Call
Secure Workflow
USA · Canada · Australia